Superceding filing after e-filing? E-filed Form 1040 and an 1120S. Not at extended filing date yet. Can we file Superceding return for each? Paper file after e-file?

IRS instructions indicate superceding returns can be filed before the extended deadline, but no specifics about whether this works if you are filing a paper superceding return after an e-filed return.  I have not seen any option to file a superceding return via e-file.  How are others filing their superceding returns? 

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